Code Reference

The setup, helpers, shared builders, and table programs that produce the outputs.

The project is organised so that shared logic lives in R/ and each table is a thin program in tables/ that sources the setup and calls a builder or assembles its own display frame.

Setup & Config

The session scaffolding and house style, sourced by every table program.

  • R/setup.R — libraries, data paths, read_adam(), fidelity date.
  • R/helpers.R — number/label formatters, spacer rows, p-value formatters.
  • R/clinify_defaults.R — clinify house style (fonts, rules, page geometry, row pitch).
  • R/tplyr2_defaults.R — project-wide tplyr2 rounding/format defaults.
  • R/titles.R — titles/footnotes from data/titles.xlsx with token substitution.

Shared Builders

Reusable engines behind the repeated table families.

  • R/efficacy.R — build_efficacy_table(), the ANCOVA efficacy builder (14-3.x).
  • R/ae.R — build_ae_table(), the nested adverse-event builder (14-5.x).

Table Programs

One program per output under tables/. Each is listed with its full title in the sidebar under Code Reference → Table Programs, and links back to the output it produces.